Identification and cloning of a new subfamily of sulfatases and functional embryonic techniques for characterization of such proteins

ABSTRACT

Nucleic acid sequences encoding members of a new subfamily of sulfatases and polypeptides encoded thereby are provided. Compositions and methods of modulating sulfatases of this new subfamily to modify growth properties and differentiation of cells, as well as the ability of cells to prevent viral entry and to prevent recruitment of lymphocytes to a site of inflammation are also provided. The compositions and methods are useful in treating cancer and inhibiting metastases, promoting differentiation of stem cells into muscle, neural and renal cells and inhibiting viral infection and inflammation. In addition, functional embryonic techniques for identification and characterization of developmental regulatory genes such as these sulfatases are provided.

This application claims the benefit of priority from U.S. Provisional Application Ser. No. 60/155,738, filed Sep. 23, 1999.

INTRODUCTION

This invention was supported in part by funds from the U.S. government (NIH Grant No. HD07796-27) and the U.S. government may therefore have certain rights in the invention.

BACKGROUND OF THE INVENTION

Glucosamine-6-sulfatase (G6S) is a lysosomal enzyme found in all cells. This exo-hydrolase is involved in the catabolism of heparin, heparin sulphate and keratin sulphate. Deficiencies in G6S result in the accumulation of undegraded substrate and the lysosomal storage disorder mucopolysaccharidosis type IIID.

Regional mapping by in situ hybridization of a ³H-labeled human G6S cDNA probe to human metaphase chromosomes indicated that the G6S gene is localized to chromosome 12 at q14. Localization to the G6S gene to chromosome 12 was confirmed via Southern blot hybridization analysis of DNA from human x mouse hybrid cell lines (Robertson et al. Hum. Genet. 1988 79(2):175-8).

Human liver contains two major active forms of glucosamine-6-sulfatase, form A which has a single 78 kDa polypeptide and form B which has two polypeptides of 48 kDa and 32 kDa. A 1761 base pair cDNA clone encoding the complete 48 kDa polypeptide of form B has been isolated (Robertson et al. Biochem. Biophys. Res. Commun. 1988 157(1):218-24). This sequence reveals homology with the microsomal enzyme steroid sulfatase. The amino acid sequence was also deduced from this human G6S clone (Robertson et al. Biochem. J. 1992 288(2):539-44). The predicted sequence has 552 amino acids with a leader peptide of 36 amino acids and contains 13 potential N-glycosylation sites, 10 of which are believed to be used. The derived amino acid sequence shows strong sequence similarity to other sulfatases such as the family of arylsulfatases.

SUMMARY OF THE INVENTION

The present invention relates to the identification and/or cloning of new, evolutionarily conserved members of a subfamily of sulfatases, referred to herein as Sulf-1 and Sulf-2, from quail embryos (QSulf-1), C. elegans (CeSulf-1), Drosophila melanogaster (DmSulf), mice (MSulf-1 and MSulf-2) and humans (HSulf-1 and HSulf-2).

The present invention also relates to Functional Embryonic Technologies (FETs) which serve as convenient and efficient embryo assays for the investigation and determination of the developmental functions of regulatory genes. Using FETs, members of this new family of sulfatases are demonstrated herein to be essential components of Sonic hedgehog (Shh) inductive signaling which is critical for the specification of neural and mesodermal lineages, as well as other lineages in the vertebrate embryo.

Thus, the present invention also relates to compositions and methods of using these compositions to modulate the expression and/or activity of proteins which are members of this subfamily of sulfatases to modify growth and differentiation of cells, as well as viral infection and inflammation. These methods are believed to be useful in the treatment of cancer, including metastases; in inducing differentiation of cells into myoblasts, neural cells and renal cells for use in the treatment of skeletomuscular degenerative diseases, neurodegenerative diseases and renal degenerative diseases; in inhibiting infection via viruses which utilize sulfated heparin proteoglycans for entry into cells; and in controlling the recruitment of lymphocytes by cells to a site of inflammation.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 provides a diagram of the four stages and assays used in each stage of functional embryonics technologies (FETs).

DETAILED DESCRIPTION OF THE INVENTION

Functional Embryonics Technologies (FETs) is an efficient and cost-effective functional genomics strategy to investigate the developmental functions of novel mammalian genes in processes of stem cell specification, tissue differentiation, and organ formation. The FETs strategy combines differential molecular cloning techniques and bioinformatics analysis of genome databases with the use of simple, cost effective, and efficient bioassays in model embryos to identify genes with unique embryological, cellular and biochemical functions. It is believed that the majority of genes with important developmental regulatory and structural functions have not yet been discovered. There is ample evidence that many of the regulatory genes identified with lineage-specific expression in embryos are also regulators of stem cell production and differentiation, i.e., genes involved in building the differentiated tissues and organs in the embryo during development.

Many of the known genes that regulate embryonic development are conserved in animals, including C. elegans, Drosophila, Xenopus, chick, mouse, and human. Simple and efficient embryo bioassays are now available to identify the required functions of developmental regulatory genes in processes of stem cell specification, tissue differentiation and organogenesis, based on their dominant regulatory activities when misexpressed in embryos and in embryonic cells. In FETs, these methods are sequentially combined to identify novel regulatory genes having applications in the development of therapeutics for both stem cell production and tissue regeneration.

The starting point for FETs is the selection of a novel candidate regulatory or structural gene or set of genes for functional analysis. In one embodiment, candidate genes are identified through bioinformatic searches of the human or mouse genome and/or EST databases based on their significant gene family relationships, their evolutionary conservation with C. elegans and Drosophila genes, or their protein domain motifs. In another embodiment, directed specifically towards identification of genes with developmental functions, molecular technologies are used to define tissue-specific or developmentally-related sets of expressed genes. Examples of such molecular technologies include, but are not limited to, DNA microchip arrays, in situ hybridization, and/or subtractive cDNA cloning techniques, in combination with genome data base analysis. Once candidate genes of interest have been identified, their developmental functional activities are accessed through a series of rapid and cost-effective FETs assays, as presented in FIG. 1.

In Stage I, candidate genes with lineage-specific expression are identified by high volume in situ hybridization and microchip array assays. Stage II and III assays are directed towards identification of genes with activities that control early developmental processes in the embryo: cell lineage specification, proliferation, apoptosis, and the initiation of cell differentiation. Stage II RNAi gene knockout assays define the essential requirements of mammalian homologues of C. elegans and/or Drosophila genes in developing embryos. Antisense knockout assays can also be performed in chick embryos in Stage II to define the essential requirement of avian homologues. Stage III mRNA misexpression assays define the regulatory capacities of specific genes to dominantly direct developmental processes in vertebrate embryos. These Stage II and III assays also provide an opportunity to investigate the functional interactions of candidate genes with known genes in specific developmental pathways including Hedgehog, Wnt, BMP, FGF, and EGF pathways. Stage IV assays utilize DNA transfection in cell cultures to misexpress cDNAs of candidate genes in selected stem cell lines and transgenic mice, and loss-of-function gene targeting analysis to investigate cell biological functions of candidate genes in mammalian embryos. Stage II and III assays provide simple and efficient screens to identify candidate genes for analysis in mouse embryos by gene targeting and transgenesis, as well as for detailed functional studies in model embryos.

As shown in FIG. 1, in Stage II loss of function is determined via Embryo RNAi Gene Knockout Assays and/or Chick Embryo Antisense Knockout Assays. The C. elegans genome sequence is complete, and the Drosophila genome sequence will be completed in the near future, making possible the identification of homologues of mammalian genes in C. elegans and Drosophila. Homologues of mouse genes can be functionally disrupted in embryos by RNAi technology, which involves microinjection of double-stranded RNA of transcribed regions of the candidate homologue genes into gonads or early embryos (Kennerdell, J. R. and Carthew, R. W. Cell 1998 95(7):1017-26; Misquitta, L. and Paterson, B. M. Proc. Natl Acad. Sci. USA 1999 96(4):1451-6). Double stranded RNAs are routinely produced by PCR amplification of genomic DNA, using primers derived from sequence databases, and cloned into expression vectors for RNA production. Double stranded RNAs of partially transcribed sequences are sufficient for RNAi gene knockout, and multiple genes can be inactivated simultaneously to characterize genes with redundant functions. RNAi causes germline disruptions of gene function in C. elegans. Analysis to define mutant phenotypes is effectively performed on living or fixed embryos using DIC and fluorescence microscopy because of the limited cell numbers in these embryos. GFP reporter genes are available to monitor cell lineage specification, tissue differentiation and organ formation. Phenotypic assays can be tailored to monitor specific developmental pathways using specific reporter and genetic backgrounds. RNAi assays can be accomplished rapidly in a time frame of days and weeks and can be expected to identify genes with essential regulatory and structural functions for more detailed genetic and molecular studies in these organisms as well as for Stage II analysis. Similarly, chick embryo antisense knockout assays are fast assays which, as shown herein, are useful in identifying genes with essential and structural functions in avian embryos.

In Stage III, gain of function is determined via Embryo Misexpression Assays in Xenopus, chick neural tube and zebrafish. The Xenopus egg is ideally suited for misexpression and overexpression of candidate genes, by microinjection of mRNA or cDNA expression plasmids into blastomeres of newly fertilized eggs (Thomsen, G. H. and Melton, D. A. Cell 1993 74(3):433-41.). Full length cDNAs are recovered by PCR amplification of mouse embryo cDNA libraries using primers to sequences derived from genomic and EST data bases. Xenopus microinjection assays are performed on candidate mouse and human RNAs whose homologues have functional activities in Stage II assays or on candidates that do not have recognized C. elegans and Drosophila homologues. Xenopus misexpression assays are performed on pools of multiple RNAs candidates, allowing for high through-put assays on groups of mRNAs. Histological, marker, and reporter gene expression phenotypes are used to monitor regulatory activities in well-established assays. Dominant mutant receptors, signaling components and transcription factors are available, making possible co-expression studies to investigate gene interactions with known developmental pathways. Xenopus misexpression assays can be accomplished in a time frame of days and identify regulatory genes that control early developmental cell lineage specification and differentiation.

Chick Neural Tube Electroporation is also performed. The chick embryo is utilized to investigate the functions of candidate EEA cDNAs by neural tube electroporation (Sakamoto et al. FEBS Letters 1998 426(3):337-41). Electroporation is a technically simple and highly efficient method for transfecting primitive neural tube cells with cDNA expression vectors to misexpress candidate mRNAs. Histological and reporter gene assays are used to determine the effects of misexpression on signal transduction and cell differentiation processes in the neural tube. Chick assays can be accomplished in a time frame of days and identify regulatory and structural genes that control processes of developmental signaling and patterning, axon guidance, and neuronal cell differentiation.

Zebrafish Microinjections are also performed. Mutations that disrupt a large number of specific developmental processes have been identified in Zebrafish, making possible functional interaction studies with candidate genes as well as misexpression assays in wild type embryos (Westerfield, 1995 The Zebrafish Book. University of Oregon Press). These assays involve mRNA injection into embryonic blastomeres and histological and reporter gene assays. The Zebrafish embryo develops rapidly, and the embryo is transparent and small, so it is possible to evaluate cellular processes at high resolution to identify RNAs with regulatory and structural functions. RNA injections are technically more demanding and less efficient in the Zebrafish than in Xenopus, but can be accomplished in a time frame of days.

In Stage IV, genes with in Stage II-III assays are selected for mammalian expression assays via mouse gene targeting and transgenic studies. Gene targeting is technically demanding, expensive and requires a substantial commitment of time (one year), but is essential to determine the loss-of-function embryonic phenotypes, which will be evident if the gene of interest is not a redundant gene or is not active in a parallel pathway (Hogan et al. Manipulating the Mouse Embryo: A Laboratory Manual. 1994 New York, Cold Spring Harbor Laboratory Press, 2nd Edition). Once the mouse genome is sequences, however, the cloning procedures required for gene targeting will be simplified. RNAi technology or an equivalent also may be available to provide more highly efficient procedures for producing mouse mutants. Candidate cDNAs under the control of UAS promoters and these promoters themselves will be misexpressed in different tissues of developing embryos using lines of mice engineered with tissue-specific transgenes to produce GAL4, a UAS transcriptional activating protein. These studies identify dominant regulatory activities of candidate genes. An increasing number of GAL4 lines of mice are being generated, making possible conditional misexpression of candidate cDNAs in the mouse embryo. Transient transgenic assays are preferable and can be accomplished in a matter of several weeks. Production of germline transgenics is technically demanding and costly; assays involve production of transgenic mice lines, which requires 4-6 months.

FETS were used to functionally characterize members of the new Sulf-1 and Sulf-2 sulfatase gene subfamily.

QSulf-1 was cloned from newly formed somites of quail embryos by differential display technology as described by Liang, P. and Pardee, A. B. (Science 1992 257:967-971). It was found that somite formation in vertebrate embryos is coordinated with the activation of master regulatory gene including the transcription factor genes Pax1 and MyoD/Myf5, which are essential for the determination of sclerotome cartilage and myotomal muscle lineages, respectively. Differential display experiments were therefore directed to identify additional genes that are activated during somite formation as candidates for other genes in the sclerotome and myotome lineage determination pathways. The screen involved assaying for cDNA copies of mRNA transcripts that are present in the three newest born somites at the posterior edge of somite formation in stage 12 embryos, but are absent in the presegmented mesoderm immediately posterior to these somites. As somite pairs are born in quail embryos every 90 minutes, the window of gene expression being investigated in these studies is approximately 4.5 hours, thus allowing recovery of “immediate early” somite response genes. A number of somite-specific, differentially displayed transcripts were identified in these studies and clones were sequenced. However, because the differential display strategy recovers cDNAs that encode only small sequence intervals restricted largely to the 3′ untranslated regions, these sequences are generally not informative regarding encoded proteins.

Thus, to identify clones of interest for further analysis, differential display clones were used as in situ hybridization probes and RT-PCR primers to assay expression in somites and presegmental mesoderm of stage 12 somites. Clones that showed expression in somites, but not presegmental mesoderm met the criteria for the screen. Clones were chosen for further analysis based on confirmation of their patterned expression in the somite. Specifically, clones of transcripts were identified in the ventral somite, which gives rise to the sclerotome lineages, and/or the dorsal medal somite, which gives rise to the epaxial myotomal lineages.

The QSulf-1 cDNA hybridized to transcripts that were activated during somite formation, initially in the ventral, sclerotomal lineage and then in the more dorsal myotomal lineage. Expression also occurred in the notochord, the neural tube floor plate, in interneurons and other sites. The full length cDNA of QSulf-1 and the translated protein sequence of QSulf-1 are depicted in SEQ ID NO:1 and SEQ ID NO:2, respectively.

Based upon these experiments, the full length cDNA clone of QSulf-1 was recovered by screening a stage 12 quail cDNA library with the QSulf-1 probe. These full length clones have extensive 5′ and 3′ UTR sequences and the library was directionally cloned in a vector that includes a CMV promoter, to allow immediate transfection studies.

Sequence and computer database analyses of the quail, full-length Sulf-1 cDNA revealed the open reading frame to have homology with sulfatases in other species. For example, the QSulf-1 sequence was closely related to the cDNA of human glucosamine-6-sulfatase (Robertson et al. Biochem. J. 1992 288:539-544). A related protein, referred to herein as CeSulf-1, was also identified by Gene Finder in the C. elegans database. The CeSulf-1 protein translated from cosmid CELKO9C4 is depicted herein as SEQ ID NO:3. In addition, two Drosophila ESTs AA391898 (SEQ ID NO:4) and AA438825 (SEQ ID NO:5) have been identified as clones for a Drosophila sulfatase (DmSulf) based upon their close relationship to CeSulf-1 and QSulf-1. These ESTs have been demonstrated to be expressed in early mesodermal cells that give rise to muscles in Drosophila similar to QSulf-1 in quail. A mouse EST A1592342 (SEQ ID NO:6) has also been identified as a clone for a murine sulfatase (MSulf-1) along with a human cDNA AB029000 (SEQ ID NO:15; Kikuno et al. DNA Res. 1999 6:197-205) and human ESTs and proteins translated from human ESTs AI344026 (SEQ ID NO:17 and SEQ ID NO:18; Adams et al. Nature 1995 377(6547): 3-174), and AA361498 (SEQ ID NO:19 and SEQ ID NO:26; Adams et al. Nature 1995 377(6547): 3-174) for human sulfatase (HSulf-1) based upon their close relationship to CeSulf-1 and QSulf-1. The protein translated from MEST A1592342 is depicted in SEQ ID NO:7. The protein translated from HSulf-1 AB029000 is depicted in SEQ ID NO:16.

A second member of this sulfatase subfamily, referred to herein as Sulf-2, was also identified in mouse (MSulf-2) and human (HSulf-2) based upon its close, but distinct, sequence relationship to QSulf-1, MSulf-1 and HSulf-1. MSulf-2 MEST AA015479 is depicted in SEQ ID NO:8; MSulf-2 MEST AA138508 is depicted in SEQ ID NO:9; MSulf-2 MEST AA461855 is depicted in SEQ ID NO:10; MSulf-2 MEST AA727360 is depicted in SEQ ID NO:11; and MSulf-2 MEST W97878 is depicted in SEQ ID NO:12. The contig of these MSulf-2 ESTs is depicted in SEQ ID NO:13 and the translated protein of the contig of Msulf-2 ESTs is depicted in SEQ ID NO:14. HSulf-2 HEST AA323130 and the translated protein of this HSulf-2 EST are depicted in SEQ ID NO: 21 and 22, respectively. Further MSulf-2 is expressed in somites and neural cells as is MSulf-1 and QSulf-1. However, expression studies using in situ hybridization methods have shown that mouse MSulf-1 and MSulf-2 are expressed differentially in tissues of early mouse embryos. MSulf-1 is expressed in dermomyotome and dorsal neural tube lineages, whereas MSulf-2 is expressed in more ventral sclerotome and ventral neural tube lineages. Accordingly, both MSulf-1 and MSulf-2 are believed to have functions in the differentiation of different tissues and organs in the embryo.

The active site of the sulfatase enzyme is located in the N-terminal 200 amino acids. Conservation of amino acid residues in this enzymatic active site domain in Sulf-1 and Sulf-2 proteins from all species studied define this gene subfamily as functional sulfatases. The Sulf-1 and Sulf-2 proteins are clearly different from human G6S and the arylsulfatases described previously in the art.

In situ hybridization analysis revealed that the expression of QSulf-1 is temporally regulated and spatially patterned in the quail embryos. The striking patterns of expression observed indicate QSulf-1 to have lineage-specific functions in the quail embryo. Specifically, QSulf-1 is activated in somites following somite formation, in a progression that parallels MyoD activation. In early embryos prior to 10 somite pairs, somites do not express detectable QSulf-1. Expression becomes active and coordinated with somite formation in embryos with 10 to 15 somite pairs. Initially, expression is detected in the ventral medial somite, where Pax1 is activated and the sclerotome lineage is derived. Expression becomes dorsalized during somite maturation, localizing expression to the dorsal medial region of MyoD/Myf5 activation and formation of the myotome lineage. Expression does not extend into the dermyotome, but rather is restricted to cells immediately ventral. These cells are believed to comprise the developing myotomal muscle. Expression in the notochord is earlier than in somites and follows an anterior to posterior progression in the region of somite formation. Expression does not occur in the notochord adjacent to presegmental mesoderm. Expression is activated in the floorplate in coordination with floor plate differentiation, which occurs anterior to the zone of somite formation. Expression is observed somewhat later in the interneuron region of the neural tube. QSulf-1 is expressed specifically in the mesonephros and nephros, but not in the duct. Expression in the brain and limb bud also is highly localized and patterned.

Using surgical manipulations as described by Pownall et al. (Development 1996 122:1475-1488), it was found that QSulf-1 is an Shh-dependent somite gene. Specifically, it was found that the notochord is required for somite expression. Further, the lateral mesoderm is required to maintain lateral expression. The notochord requirement is believed to be due to Sonic hedgehog signaling since antisense inhibition of Shh was found to block the activation of QSulf-1 as it does the activation of MyoD and Myf5 in the epaxial myotomal lineage and Pax1 in the sclerotome lineage (Borycki et al. Development 1998 125:777-790). Antisense Shh also diminishes QSulf-1 expression in the floorplate and notochord as well as the mesonephros. Lateral plate mesoderm is known to mediate repression of MyoD and Myf5 through BMP4. This is also believed to be the repressive signal that maintains QSulf-1 expression in the medial somite.

Phosphothiolated antisense oligonucleotides were developed to inhibit expression of QSulf-1. When embryos were treated with these specific antisense oligonucleotides, expression of MyoD was specifically blocked in somites that are in the process of activating MyoD as well as in somites that are maintaining expression. Since Shh is required to activate and maintain epaxial myotome expression of MyoD and Myf5 in quail and mouse, it is believed that QSulf-1 has an essential function for MyoD/Myf5 activation downstream of the Shh signal. Thus, the role of QSulf-1 in Shh signaling is restricted to its sites of expression within the larger Shh response domain.

The structure, regulation and functional roles of this new subfamily of sulfatases determined through these experiments indicate members of this family such as Sulf-1 and Sulf-2 to act as either direct regulators of Shh diffusion from their notochord source of synthesis or as mediators of secondary signals such as FGF and Wnts with relay functions in gene regulation. Because of the close homology to the human G6S gene, it is believed that the function of Sulf-1 and Sulf-2 is related to a similar sulfatase activity to G6S which cleaves linked sulfate groups at the 6 position of the non-reducing glucosamine residues of heparin sulfate and keratin sulfate. Since QSulf-1 has been found to be regulated by Shh and is essential for its functions to mediate MyoD and Myf5 activation, this gene is also believed to function in the Shh pathway, directly or in a relay, and not in a parallel pathway. Further, since its expression is highly patterned in a subset of domains that are Shh responsive in the neural tube and somites, as well as the brain and limb, it is believed to have lineage-restricted functions related to the localized expression. The hydrophobic domain of its N-terminus is indicative of it functioning on the cell surface or being secreted to promote the localized desulfanation of heparin sulfanate proteoglycans in the ECM in the region of ECM of cells expressing the somite neural tube, brain, limb and mesonephros.

To investigate the secretion properties of QSulf-1, an expression vector encoding QSulf-1 with a C-terminal myc tag sequence was transfected into mammalian cells in culture and electroporated into neural tube of the developing chick embryo. Expressed QSulf-1 can then be localized by Western blotting methods as well as immunostaining using myc antibodies. It was found that QSulf-1 localized to the cell surface, where it was bound but not released freely into the extracellular space. Expressed QSulf-1 with a substituted collapsin N-terminal signal peptide also localized to the cell surface, thus providing further evidence that the sulfatase is secreted, but then binds to a component of the cells surface. Accordingly, QSulf-1 is the first known extracellular sulfatase, as all previously described sulfatases are lysosomal and involved in sulfate catabolism. The localization of QSulf-1 to the cell surface places this enzyme in proximity to its putative heparin sulfate proteoglycan (HSP) substrates, glypican and syndecan. As the sulfation state of glucosamine 6-sulfate on these HSP substrates regulates developmental signaling, this localization is consistent with other evidence provided herein that QSulf-1 has regulatory functions in the control of developmental signaling through its activity to regulate the sulfation states of glucosamine 6-sulfates on extracellular molecules such as HSP substrates.

A similar antisense approach to that described for somites can be used to better characterize QSulf-1 function in the neural tube floor plate and the notochord where QSulf-1 is expressed. In these experiments, embryos are treated with antisense QSulf-1and expression of notochord, floor plate, motor neuron and interneuron-specific marker gene (Roelink et al. Cell 1994 76:761-775) is assayed. Pax3 is used as a marker to monitor the global changes in dorsal ventral neural tube patterning. Similar observations to somites treated with antisense QSulf-1 are expected as specific genes whose function is lost in response to QSulf-1 antisense treatment will be identified. Since QSulf-1 may regulate FGF activity to control the transition of somite cells from cell proliferation to differentiation, portions of premature differentiation in response to antisense QSulf-1 will also be monitored via an assay using differentiation markers over a time course treatment and inhibition of cell proliferation determined via BrdU incorporation and PCNA immunostaining.

To complement antisense experiments, QSulf-1 can also be misexpressed in the neural tube at various levels along the AP axis of the developing quail embryo using electroporation technology. In these experiments, QSulf-1 DNA and a control GFP expression plasmid are microinjected into the canal of the neural tube, which is then subjected to a brief electroporation shock to allow uptake of DNA. Embryos are then cultured at various times from 6 to 24 hours, thereby allowing time for overexpression of QSulf-1 at positions along the dorsal ventral axis of the neural tube in the region of the injection. This region of injection is varied relative to expression of endogenous QSulf-1. Embryos successfully electroporated are then fixed for in situ and antibody analysis. Notochord and neural tube markers of gene expression used in the antisense experiments are used to monitor gene expression. BrdU incorporation and PCNA immunostaining are used to monitor cell proliferation. C-terminal fusions of SdQSulf-1 with GFP in expression vectors can also be constructed for electroporation into neural tube and for transfection into cultured cells. GFP constructs permit monitoring of QSulf-1 expression directly, as well as determination of subcellular localization in membranes and possible secretion. The molecular expression phenotypes in response to overexpression to define the timing and patterning of neural differentiation provides complementary information to that obtained from the antisense experiments.

RT-PCR and RNases protection assays are also used to examine the expression of Sulf-1 in cultured quail myoblasts and the mammalian C2C12 myoblast cell line during the transition from cell proliferation to myofiber differentiation. In addition myoblasts can be transfected with Sulf-1 expression constructs in transient and stable assays to determine if overexpression enhances myoblast differentiation and/or changes the responsiveness of the cells to addition of FGF in the stimulation of proliferation and inhibition of differentiation. Mouse ESTs for Sulf-1 and Sulf-2 have been recovered from cultured myoblasts, thus indicating that members of this sulfatase subfamily are also expressed in murine myoblasts.

Xenopus embryos differentially utilize Shh, Wnt and FGF signaling pathways in the control of axis determination and mesoderm, endoderm and ectoderm cell specification (Heasman, J. Development 1997 124:4179-4191 and Pownall et al. Development 1996 122:3881-3892). A variety of molecular markers and morphological phenotypes are available to monitor these processes in overexpression of specific gene products by injection of in vitro transcribed mRNAs into newly fertilized embryos. Importantly, each of these signaling pathways can be distinguished by a unique combination of well-described perturbations in molecular and morphological phenotypes. For these experiments, Sulf-1 or Sulf-2 RNA is microinjected into blastomeres of newly fertilized embryos. These embryos are then allowed to undergo embryonic development. Injected embryos are assayed for abnormalities in body plan morphology and tissue histology, as well as for the misexpression of key marker genes that are characteristic of specific signaling pathways. For example, if overexpression of Sulf-1 or Sulf-2 interferes with FGF signaling, loss of tail mesoderm development and loss of myoD and Brachyury expression in injected embryos would be expected. Enhancement of FGF signaling would cause loss of head structures, gain of tail mesoderm, and increased myoD and Brachyury expression. If injected Sulf-1 or Sulf-2 enhances maternal Wnt signaling, duplication of axis phenotypes, increased Siamosis, which is a primary target of Wnt signaling, would be observed. Enhancement of zygotic Wnt signaling results in loss of head specification, gain of tail formation and increase in MyoD expression while loss of zygotic Wnt signaling results in loss of tail formation and MyoD expression. Enhancement of Shh signaling results in increased expression of floorplate and myogenic specification markers such as HNF3β and MyoD, while loss of Hedgehog signaling has the opposite molecular phenotype as well as causing cyclopecia in embryos (Altaba, A. R. Development 1998 125:2203-2212).

In addition, since the C. elegans genome sequence is nearly complete, C. elegans homologues of vertebrate genes and related ESTs can be readily identified by computer analysis. In fact, the CeSulf-1 homologue was identified in the worm genome database and is depicted in SEQ ID NO:3. Based on the expression of QSulf-1 in quail embryos, and the homology of this gene to Sulf-1 and/or Sulf-2 identified in C. elegans, Drosophila, mouse and human, it is believed that Sulf-1 and Sulf-2 are expressed in neural and muscle lineages in various species.

In C. elegans, the expression of any cloned gene can be readily disrupted for developmental analysis using RNAi technology. The RNAi procedure involves microinjection of double-stranded RNA in the coding region of the candidate genes into the oviduct and analysis of the phenotypes in emerging embryos. CeSulf-1 mutants can thus be generated in C. elegans by RNAi and by screening insertion mutant libraries for Sulf-1 mutants. RNAi and insertion mutant strains can be characterized for lineage-specific lesions in early developmental processes, which can be assessed by microscopic analysis and analysis of gene expression using in situ hybridization and antibody markers. Of specific interest are CeSulf-1 resulting in phenocopy loss-of function mutations of FGF, Wnt and Hedgehog signaling and lesions in neural and muscle lineages. For example, assays can be performed to determine whether CeSulf-1 is required for CeMyoD expression and myogenesis as demonstrated in quail embryo somites. Also, since FGF signaling in C. elegans is required for the migration and proper position of sex myoblasts (Burdine et al. Development 1998 125:1083-1093), this can also be examined in the CeSulf-1 mutant strains. Wnt signaling is required for neuroectoblast lineage determination and for the polarity of asymmetric cell division in tail hypodermal cells (Jiang, L. I. and Sternberg, P. W. Development 1998 125:2337-2347).

Based upon the activities demonstrated herein for members of this new sulfatase subfamily, it is believed that modulation of the expression and/or activity of proteins in this sulfatase family, such as Sulf-1 and Sulf-2, can be used to modify growth properties and differentiation of cells in various species including humans. Modulation of growth properties of cells through alteration of Sulf-1 or Sulf-2 levels or activity is expected to be useful in treatment of cancer and in the inhibition of metastases. Modulation of sulfatase levels and/or activity is also useful in promoting differentiation of stem cells into myoblasts, neural cells and renal cells. Accordingly, modulation of members of this new sulfatase subfamily is also expected to be useful in developing cells for transplant in the treatment of muscle degenerative diseases, neurodegenerative disease and renal degenerative disease and in initiation growth of healthy cells and healing diseased cells in these conditions. By “modulation” it is meant to increase or decrease levels or activity of proteins which are members of this subfamily of sulfatases, preferably Sulf-1 or Sulf-2. For example, the presence of a signal peptide in these proteins is indicative of their secretion. Accordingly, to increase protein levels, a gene encoding a member of this sulfatase subfamily can be administered via well known gene therapy methods. Alternatively, levels of the sulfatase can be increased by administration of a composition comprising purified, isolated sulfatase protein. Activity of this protein can be increased by administering an agonist designed to target and activate the sulfatase enzyme. Levels of expression of the sulfatase protein can be decreased by administration of an antisense oligonucleotide designed to hybridize with the sulfatase gene, thereby inhibiting its expression. Activity of the sulfatase protein can be decreased by administering an antagonist designed to target and inhibit activity of the sulfatase enzyme.

Further, it is believed that the extracellular glucose 6 sulfatases, Sulf-1 and Sulf-2, will be useful in the inhibition of viral infection and the control of inflammation. It is known that viruses such as Herpes Simplex virus and HIV-1 utilize sulfated heparin proteoglycans for viral entry (Shukla et al. Cell 1999 99:13; Banks et al. J. Cell Science 1998 111:533). Accordingly, modulating, or more preferably increasing, levels and/or activity of the extracellular glucose 6 sulfatases of the present invention, Sulf-1 and Sulf-2, via administration of purified enzymes or agents which increase levels or activity of these enzymes inhibits viral entry via sulfated heparin proteoglycans thereby inhibiting viral infection. Viral infections which can be inhibited via modulation of Sulf-1 and Sulf-2 are those caused by viruses which utilize sulfated heparin proteoglycans for viral entry. Similarly, it is known that cell surface glycosaminoglycans, including heparin sulfate proteoglycans, bind to cytokines to recruit lymphocytes to sites of inflammation (Kuschert et al. Biochemistry 1999 38:12959). The lectin-like receptor, L-selectin, also mediates rolling of lymphocytes on endothelial venules through interactions with sulfated glycosaminoglycans, including glucoaminoglycans and galacrosaminoglycans (Bistrup et al. J. Cell. Biol. 1999 145:899). Accordingly, extracellular glucose 6 sulfatases, Sulf-1 and Sulf-2, of the present invention or agents which modulate Sulf-1 or Sulf-2 activity or levels may also be used to control inflammation through modulation of lymphocyte recruitment.

22 1 5769 DNA quails 1 ggcacgagct cagccctata gtttcagccc ttgtctctgc ctccagctcc ttaagagcca 60 cccagcccca gcgatcggat tgggcagccc gccttgacac accactgtgc tgagtgcttg 120 aggacgtgtt tcaacagatg gttggggtta gtgtgtgtca tcacactcga gtggggatta 180 gggcagagag gcagcccggc tggagctgtg tggtcttccc caagtgggaa ctgcgagcaa 240 aagaagaagc acctagcttt gggggagaag agagaggaat cctctccagc agctcagagg 300 ggaaaataaa accctcactc tttattcagc cagaaaagaa agactgatct ggggaagagt 360 ggaaaaacaa tgacaatata tctttcttgc ataagacaaa ggtgttgcct acaataaatt 420 cactgagcaa gaaatacaga cttctgtcca gtgctatgaa aattaaccaa ggcacattaa 480 cttcaggaaa tcttcaaagg acagaggaag aagctgtact gaacagtcct ggagactctg 540 aagcacaggc acagcgctga ggtctttgac tgacagacct tctgctttct ccttcttgca 600 gggctcctcc tacagatgtt ctgaacacgt ctgcatccca gcaattttgt actgcaccca 660 ggtcttgaaa actggagttc aggcacttct ggattgggtt tgtgttgttt ttttttttca 720 ttgaaatact ggaactacta tgaagacctc ttggtttgca ctcttcttgg cagtgctcag 780 tactgaactg ctgacaagtc attcttccac tctcaagtcc ctgaggttca gaggccgtgt 840 gcagcaagag agaaaaaata tcagaccaaa tatcatcctt gtgctcacag atgaccaaga 900 tgtggagcta gggtccttac aagtgatgaa caaaaccaga cggattatgg agaatggagg 960 ggcatccttc atcaatgcct tcgtaacaac cccgatgtgc tgcccatcac gttcctccat 1020 gctgactgga aagtatgtgc acaaccacaa catatacacc aacaatgaaa actgctcttc 1080 tccctcctgg caggccactc acgagccacg cactttcgcc gtgtatctga ataacactgg 1140 gtatcgaaca gctttttttg ggaaatacct caatgaatac aatggcagct acatccctcc 1200 tgggtggaga gagtgggttg gattagtgaa gaactctcgc ttctataatt acaccatttc 1260 tcgcaatggt aacaaagaga agcatggatt tgattatgca aaggactact tcacagacct 1320 aatcactaat gagagcatta attacttcag aatgtccaag aggatatacc cacataggcc 1380 cataatgatg gtcatcagcc atgctgcgcc tcatggccct gaggattcgg ccccacagtt 1440 ctcagagctc taccccaacg cttcacagca tatcaccccc agctataact atgcaccaaa 1500 catggataag cactggatca tgcagtacac ggggcccatg ctgcctatcc acatggagtt 1560 tacaaacgtc ttgcaacgca agagacttca gaccctgatg tcagttgatg actctatgga 1620 aagattatac caaatgcttg cagaaatggg agagctggag aatacctaca ttatttacac 1680 agctgaccat ggttaccata ttgggcagtt tggactggtc aaggggaagt caatgccata 1740 tgactttgat attcgagttc ctttctttat tcgtggtcca agtgtagagc caggatctgt 1800 agtgcctcag atagttctga atattgatct tgcaccaaca attctggata ttgcaggact 1860 tgacacacct ccagatatgg atggcaaatc tgtcctaaag cttctagact tggagagacc 1920 aggaaatagg tttcgaacaa acaagaagac caaaatctgg cgtgacacat tcctggtgga 1980 aagaggcaaa tttctgcgca aaaaagagga agctaacaaa aacactcagc aatctaatca 2040 actgccaaag tatgagaggg taaaagaatt atgccaacaa gcgagatacc agacagcctg 2100 tgaacaacca ggacagaagt ggcagtgcac agaagatgct tctggcaagc ttcgaattca 2160 caagtgcaag gtatctagtg acatcctggc catcaggaaa aggacccgca gcatccactc 2220 caggggatay agtggtaaag ataaggactg caactgtgga gacaccgatt tccgaaacag 2280 caggacccaa agaaaaaatc aaaggcagtt tctgagaaac cccagtgcgc aaaaatacaa 2340 accacgtttt gttcacactc gccaaacccg gtccttgtca gtggaatttg aaggtgaaat 2400 atatgacata aacctggaag aggaagaact gcaggtgtta aagaccagaa gtatcaccaa 2460 acgtcacaat gctgaaaatg acaaaaaagc agaggaaact gatggtgctc ctggtgacac 2520 gatggttgct gatggcactg atgttatagg tcaacccagt tctgtcagag tgacrcacaa 2580 gtgttttatt cttccaaatg acactattcr ctgtgagagg gagctgtacc aatctgccag 2640 agcctggaag gaccacaagg cttacatcga taaggagatt gaagctctcc aggacaaaat 2700 caagaatttg agggaagtta gaggacacct aaaaagaaga aaaccagacg aatgtgactg 2760 tactaaacag agctactaca acaaagagaa aggcgtaaag acccaagaga aaatcaagag 2820 ccatctacat cccttcaaag aagcagcaca ggaggtagac agcaaactgc agctgttcaa 2880 agagaatcgc agaaggaaga aggaaagaaa gggaaaaaag cgccagaaga arggggatga 2940 gtgtagcctt cctggactga catgttttac tcatgacaat aaccattggc aaactgcacc 3000 tttctggaac ttgggatctt tctgtgcttg cacaagctca aataacaaca cttactggtg 3060 tttgcgaaca gtgaatgaca cccacaattt tctcttttgt gaatttgcaa ctggcttctt 3120 ggaatwcttt gatatgaaca ctgaccccta tcagctgaca aataccgtac atacagtgga 3180 aagaggcatt ttaaatcaat tacatgtaca gttaatggaa ttacgaagtt gtcaaggtta 3240 taagcagtgc aatccgaggc cgaagggact tgaaacagga aataaagatg gaggaagcta 3300 tgatccacac agaggacagt tatgggatgg atgggaaggc taacctgccc agtttcactg 3360 gtgatgtcaa ctggcaagga ctggaaaatt tgtacagagt gaataaaagt gtatatgaac 3420 acagatacaa ctatagactt agtctggctg actggactaa ttacttgaag gatgtagata 3480 gaatgtttgc actgctgaac agttactacc agcaaaataa aacagacaag gctaacactg 3540 ctcaaagcaa cagggatgga gatgaatcat ctacatcaac ctcagcagaa atgtcttctg 3600 cagaagaggc aagtggcctg actggagaag aattggagct tattgtgcca acagactttg 3660 cagccctagc tttgagcacc atgaatttaa gtcaggagag aaaacttgaa ttaaacaatg 3720 atattcctga aaaaagtagt ttgaatgacg cacactggag aaataatcaa gctgaaaaat 3780 ggatggwgga taaagaatca gaacgttttg atatggattt cagtggaaat ggtttgatac 3840 agttggagtc ccggcatggc ttcatgctac agcccatcag cattcctcaa aaagacaytc 3900 atcaggacac tgatgctatg agagacatat ttggagatca aatgtatctt cctgtgaggt 3960 ccgatcaacc tgttgttcat caggctgtaa atgtatccat tagagattca tccatcagta 4020 cccagaaaac aggaacgttt ttgaaaaaaa caaaacagag tcttagaggg gaaacttcac 4080 aagtcctaaa catagaaggc agcgcctcat ctccactctc cttgggttag atcaagttgc 4140 agattgttaa atacattctc cttttttctt attaccagaa ttataaaggc aatcatgaca 4200 actgacattc catattgast gtagatacaa tttgcagcta aattaagacc agttcagtat 4260 ttgtctgtgt gtattttatt cacacgcaca catacrtact ttcacagtga ttcrctacac 4320 tggaaagcag gatttccagc ttttaatgaa aagaaaaagt gttaactttc taatgcagca 4380 gcacattctc tataagctaa gatttctttg acaaggatgt tcaagtgact ttctctattt 4440 ccagatgatc ccaccatgaa tgaatgtttc agtccaccca atctgtctgc ataatgtgtt 4500 tctgataaat tattttaacc actggaaatt cctaatgcca cactttcgag taaaacgatg 4560 ttgcactttt aaaatctgta tgccatacca tttatgaatc taataactta cctgttctta 4620 gtttgttcgt tgactaatgt aattgtgaaa ccaataaata gattgacagg aaagagataa 4680 ccagcatgga ctgtggaaat agattgaata tcattttagc aaaaatattg catgtttttg 4740 ttactttgat tgaattaaat ttgctctcag aaaggtatgg ctaatacttg ttaactagag 4800 gaggatttgt ttaaattgga ttgtttccct atatacgaca ttgtcagtat taaaattaca 4860 tgagtttgtt kgkttttttt wttaactttt tttttttwtt ttatctaata ctggtagaaa 4920 ggcttgtgtc aattcatata tacttctgtc acaagatctg atttttatta gcctgaatga 4980 taccttgaaa acattctttt catttcgaga cttcaatttg tggtgttgtt ttgaacagtc 5040 attaaaggga atgataaaat catgttagat ttacattatt ctagatgcac atggggtaaa 5100 aagtagtagc ttagatagtt tttgttgttg tattgctctg aagttttttc ttgaacttta 5160 tcaaacttta aattttataa agtataaaaa aaaacacaaa aaacacaaac acaaaaactt 5220 caaaatctgt actactagaa actatctttt tttgtttttt aataaattca aagtcattag 5280 cacaacacca ccaaacgaga attacctcaa acagatgtaa ttccacagca tccagttctt 5340 gggagtgttt cctatctgtt ccgtcttaat tagtgtagtg agtgttttgg ggctactgca 5400 agcactgcag gttaaactta cgttcatcac attgtacttt cagttgaaac aagattgttt 5460 tagtaggatt ttaataattt taagaagcgg tctttttgat ggactctgta catatgttaa 5520 aattaactag ctctttgtct gatgtatgtg tcacgggctg attgatagaa gaagcgtatt 5580 tatggtcatg aatgaagcta ttatttgtac ataggtttca agttactagg ataccagctg 5640 tgtttttaaa acttgtataa tacttctgtg atacttttat agaacaattc tggcttcggg 5700 aaagtctaga agcaatattt cttgaaataa aaagtgtttt actttacctg ccaaaaaaaa 5760 aaaaaaaaa 75769 2 867 PRT quails 2 Met Lys Thr Ser Trp Phe Ala Leu Phe Leu Ala Val Leu Ser Thr Glu 1 5 10 15 Leu Leu Thr Ser His Ser Ser Thr Leu Lys Ser Leu Arg Phe Arg Gly 20 25 30 Arg Val Gln Gln Glu Arg Lys Asn Ile Arg Pro Asn Ile Ile Leu Val 35 40 45 Leu Thr Asp Asp Gln Asp Val Glu Leu Gly Ser Leu Gln Val Met Asn 50 55 60 Lys Thr Arg Arg Ile Met Glu Asn Gly Gly Ala Ser Phe Ile Asn Ala 65 70 75 80 Phe Val Thr Thr Pro Met Cys Cys Pro Ser Arg Ser Ser Met Leu Thr 85 90 95 Gly Lys Tyr Val His Asn His Asn Ile Tyr Thr Asn Asn Glu Asn Cys 100 105 110 Ser Ser Pro Ser Trp Gln Ala Thr His Glu Pro Arg Thr Phe Ala Val 115 120 125 Tyr Leu Asn Asn Thr Gly Tyr Arg Thr Ala Phe Phe Gly Lys Tyr Leu 130 135 140 Asn Glu Tyr Asn Gly Ser Tyr Ile Pro Pro Gly Trp Arg Glu Trp Val 145 150 155 160 Gly Leu Val Lys Asn Ser Arg Phe Tyr Asn Tyr Thr Ile Ser Arg Asn 165 170 175 Gly Asn Lys Glu Lys His Gly Phe Asp Tyr Ala Lys Asp Tyr Phe Thr 180 185 190 Asp Leu Ile Thr Asn Glu Ser Ile Asn Tyr Phe Arg Met Ser Lys Arg 195 200 205 Ile Tyr Pro His Arg Pro Ile Met Met Val Ile Ser His Ala Ala Pro 210 215 220 His Gly Pro Glu Asp Ser Ala Pro Gln Phe Ser Glu Leu Tyr Pro Asn 225 230 235 240 Ala Ser Gln His Ile Thr Pro Ser Tyr Asn Tyr Ala Pro Asn Met Asp 245 250 255 Lys His Trp Ile Met Gln Tyr Thr Gly Pro Met Leu Pro Ile His Met 260 265 270 Glu Phe Thr Asn Val Leu Gln Arg Lys Arg Leu Gln Thr Leu Met Ser 275 280 285 Val Asp Asp Ser Met Glu Arg Leu Tyr Gln Met Leu Ala Glu Met Gly 290 295 300 Glu Leu Glu Asn Thr Tyr Ile Ile Tyr Thr Ala Asp His Gly Tyr His 305 310 315 320 Ile Gly Gln Phe Gly Leu Val Lys Gly Lys Ser Met Pro Tyr Asp Phe 325 330 335 Asp Ile Arg Val Pro Phe Phe Ile Arg Gly Pro Ser Val Glu Pro Gly 340 345 350 Ser Val Val Pro Gln Ile Val Leu Asn Ile Asp Leu Ala Pro Thr Ile 355 360 365 Leu Asp Ile Ala Gly Leu Asp Thr Pro Pro Asp Met Asp Gly Lys Ser 370 375 380 Val Leu Lys Leu Leu Asp Leu Glu Arg Pro Gly Asn Arg Phe Arg Thr 385 390 395 400 Asn Lys Lys Thr Lys Ile Trp Arg Asp Thr Phe Leu Val Glu Arg Gly 405 410 415 Lys Phe Leu Arg Lys Lys Glu Glu Ala Asn Lys Asn Thr Gln Gln Ser 420 425 430 Asn Gln Leu Pro Lys Tyr Glu Arg Val Lys Glu Leu Cys Gln Gln Ala 435 440 445 Arg Tyr Gln Thr Ala Cys Glu Gln Pro Gly Gln Lys Trp Gln Cys Thr 450 455 460 Glu Asp Ala Ser Gly Lys Leu Arg Ile His Lys Cys Lys Val Ser Ser 465 470 475 480 Asp Ile Leu Ala Ile Arg Lys Arg Thr Arg Ser Ile His Ser Arg Gly 485 490 495 Tyr Ser Gly Lys Asp Lys Asp Cys Asn Cys Gly Asp Thr Asp Phe Arg 500 505 510 Asn Ser Arg Thr Gln Arg Lys Asn Gln Arg Gln Phe Leu Arg Asn Pro 515 520 525 Ser Ala Gln Lys Tyr Lys Pro Arg Phe Val His Thr Arg Gln Thr Arg 530 535 540 Ser Leu Ser Val Glu Phe Glu Gly Glu Ile Tyr Asp Ile Asn Leu Glu 545 550 555 560 Glu Glu Glu Leu Gln Val Leu Lys Thr Arg Ser Ile Thr Lys Arg His 565 570 575 Asn Ala Glu Asn Asp Lys Lys Ala Glu Glu Thr Asp Gly Ala Pro Gly 580 585 590 Asp Thr Met Val Ala Asp Gly Thr Asp Val Ile Gly Gln Pro Ser Ser 595 600 605 Val Arg Val Thr His Lys Cys Phe Ile Leu Pro Asn Asp Thr Ile Arg 610 615 620 Cys Glu Arg Glu Leu Tyr Gln Ser Ala Arg Ala Trp Lys Asp His Lys 625 630 635 640 Ala Tyr Ile Asp Lys Glu Ile Glu Ala Leu Gln Asp Lys Ile Lys Asn 645 650 655 Leu Arg Glu Val Arg Gly His Leu Lys Arg Arg Lys Pro Asp Glu Cys 660 665 670 Asp Cys Thr Lys Gln Ser Tyr Tyr Asn Lys Glu Lys Gly Val Lys Thr 675 680 685 Gln Glu Lys Ile Lys Ser His Leu His Pro Phe Lys Glu Ala Ala Gln 690 695 700 Glu Val Asp Ser Lys Leu Gln Leu Phe Lys Glu Asn Arg Arg Arg Lys 705 710 715 720 Lys Glu Arg Lys Gly Lys Lys Arg Gln Lys Lys Gly Asp Glu Cys Ser 725 730 735 Leu Pro Gly Leu Thr Cys Phe Thr His Asp Asn Asn His Trp Gln Thr 740 745 750 Ala Pro Phe Trp Asn Leu Gly Ser Phe Cys Ala Cys Thr Ser Ser Asn 755 760 765 Asn Asn Thr Tyr Trp Cys Leu Arg Thr Val Asn Asp Thr His Asn Phe 770 775 780 Leu Phe Cys Glu Phe Ala Thr Gly Phe Leu Glu Phe Phe Asp Met Asn 785 790 795 800 Thr Asp Pro Tyr Gln Leu Thr Asn Thr Val His Thr Val Glu Arg Gly 805 810 815 Ile Leu Asn Gln Leu His Val Gln Leu Met Glu Leu Arg Ser Cys Gln 820 825 830 Gly Tyr Lys Gln Cys Asn Pro Arg Pro Lys Gly Leu Glu Thr Gly Asn 835 840 845 Lys Asp Gly Gly Ser Tyr Asp Pro His Arg Gly Gln Leu Trp Asp Gly 850 855 860 Trp Glu Gly 865 3 709 PRT Caenorhabditis elegans 3 Met Ile Ser Asn Leu Arg Ile Ser Asn Tyr Phe Ile Ile Phe Tyr Val 1 5 10 15 Leu Phe Leu Ile Ile Pro Ile Lys Val Thr Ser Ile His Phe Val Asp 20 25 30 Ser Gln His Asn Val Ile Leu Ile Leu Thr Asp Asp Gln Asp Ile Glu 35 40 45 Leu Gly Ser Met Asp Phe Met Pro Lys Thr Ser Gln Ile Met Lys Glu 50 55 60 Arg Gly Thr Glu Phe Thr Ser Gly Tyr Val Thr Thr Pro Ile Cys Cys 65 70 75 80 Pro Ser Arg Ser Thr Ile Leu Thr Gly Leu Tyr Val His Asn His His 85 90 95 Val His Thr Asn Asn Gln Asn Cys Thr Gly Val Glu Trp Arg Lys Val 100 105 110 His Glu Lys Lys Ser Ile Gly Val Tyr Leu Gln Glu Ala Gly Tyr Arg 115 120 125 Thr Ala Tyr Leu Gly Lys Tyr Leu Asn Glu Tyr Asp Gly Ser Tyr Ile 130 135 140 Pro Pro Gly Trp Asp Glu Trp His Ala Ile Val Lys Asn Ser Lys Phe 145 150 155 160 Tyr Asn Tyr Thr Met Asn Ser Asn Gly Glu Arg Glu Lys Phe Gly Ser 165 170 175 Glu Tyr Glu Lys Asp Tyr Phe Thr Asp Leu Val Thr Asn Arg Ser Leu 180 185 190 Lys Phe Ile Asp Lys His Ile Lys Ile Arg Ala Trp Gln Pro Phe Ala 195 200 205 Leu Ile Ile Ser Tyr Pro Ala Pro His Gly Pro Glu Asp Pro Ala Pro 210 215 220 Gln Phe Ala His Met Phe Glu Asn Glu Ile Ser His Arg Thr Gly Ser 225 230 235 240 Trp Asn Phe Ala Pro Asn Pro Asp Lys Gln Trp Leu Leu Gln Arg Thr 245 250 255 Gly Lys Met Asn Asp Val His Ile Ser Phe Thr Asp Leu Leu His Arg 260 265 270 Arg Arg Leu Gln Thr Leu Gln Ser Val Asp Glu Gly Ile Glu Arg Leu 275 280 285 Phe Asn Leu Leu Arg Glu Leu Asn Gln Leu Trp Asn Thr Tyr Ala Ile 290 295 300 Tyr Thr Ser Asp His Gly Tyr His Leu Gly Gln Phe Gly Leu Leu Lys 305 310 315 320 Gly Lys Asn Met Pro Tyr Glu Phe Asp Ile Arg Val Pro Phe Phe Met 325 330 335 Arg Gly Pro Gly Ile Pro Arg Asn Val Thr Phe Asn Glu Ile Val Thr 340 345 350 Asn Val Asp Ile Ala Pro Thr Met Leu His Ile Ala Gly Val Pro Lys 355 360 365 Pro Ala Arg Met Asn Gly Arg Ser Leu Leu Glu Leu Val Ala Leu Lys 370 375 380 Lys Lys Lys Lys Lys His Met Thr Ala Leu Lys Pro Trp Arg Asp Thr 385 390 395 400 Ile Leu Ile Glu Arg Gly Lys Met Pro Lys Leu Lys Lys Ile Arg Asp 405 410 415 Arg Tyr Ile Lys Gln Lys Lys Lys Phe Asn Lys Glu Asn Arg Leu Ser 420 425 430 Lys Glu Cys Lys Arg Arg Lys Trp Gln Arg Asp Cys Val His Gly Gln 435 440 445 Leu Trp Lys Cys Tyr Tyr Thr Val Glu Asp Arg Trp Arg Ile Tyr Lys 450 455 460 Cys Arg Asp Asn Trp Ser Asp Gln Cys Ser Cys Arg Lys Lys Arg Glu 465 470 475 480 Ile Ser Asn Tyr Asp Asp Asp Asp Ile Asp Glu Phe Leu Thr Tyr Ala 485 490 495 Asp Arg Glu Asn Phe Ser Glu Gly His Glu Trp Tyr Gln Gly Glu Phe 500 505 510 Glu Asp Ser Gly Glu Val Gly Glu Glu Leu Asp Gly His Arg Ser Lys 515 520 525 Arg Gly Ile Leu Ser Lys Cys Ser Cys Ser Arg Asn Val Ser His Pro 530 535 540 Ile Lys Leu Leu Glu Gln Lys Met Ser Lys Lys His Tyr Leu Lys Tyr 545 550 555 560 Lys Lys Lys Pro Gln Asn Gly Ser Leu Lys Pro Lys Asp Cys Ser Leu 565 570 575 Pro Gln Met Asn Cys Phe Thr His Thr Ala Ser His Trp Lys Thr Pro 580 585 590 Pro Leu Trp Pro Glu Glu Leu Gly Glu Phe Cys Phe Cys Gln Asn Cys 595 600 605 Asn Asn Asn Thr Tyr Trp Cys Leu Arg Thr Lys Asn Glu Thr His Asn 610 615 620 Phe Leu Tyr Cys Glu Phe Val Thr Glu Phe Ile Ser Phe Tyr Asp Phe 625 630 635 640 Asn Thr Asp Pro Asp Gln Leu Ile Asn Ala Val Tyr Ser Leu Asp Ile 645 650 655 Gly Val Leu Glu Gln Leu Ser Glu Gln Leu Arg Asn Leu Arg Lys Cys 660 665 670 Lys Asn Arg Gln Cys Glu Ile Trp Ser Thr Ser Gln Met Leu Arg Ser 675 680 685 Pro Lys Leu Val Asp Leu Arg Val Asn Glu Lys Ser Phe Leu Thr Tyr 690 695 700 Gln Pro Glu Lys Thr 705 4 473 DNA Drosophila sp. unsure (372)..(373) a, c, g or t 4 cacttgcaag ccgggctttg ttatcgcaca aattttatgt aaacaaaaga aaacttcgat 60 ctgctccatg atcaccttag cccctctgat cgtcctagtc ctcgcttgcc tgggaaacac 120 ggccagcgag aagttgccca acattctgct gatcctgtcc gacgatcagg atgtggagct 180 gcgcggtatg tttcccatgg agcatacgat cgaaatgctg ggtttcggtg gcgccctgtt 240 ccacaacgcc tacacgccct cgcccatctg ctgtccggcg aggacgagtc tgctgacggg 300 catgtatgcg cacaatcacg gcacccggaa caattccgta agtggtggat gctacggacc 360 gcactggcgc gnntgcctgg agcccgggct ttgccataca tcttgcagca gcacggatac 420 aacaccttct ttggcgggaa gtacttgaat cagtactggg gcgctgggga tgt 473 5 540 DNA Drosophila sp. 5 aggattgatc atgaactcca agtactacaa ctacagcatc aacctgaatg gacaaaaaat 60 taagcacggt tttgactacg ctaaagacta ctatccggat ctgatagcca atgactcgat 120 tgccttcctc cgctcctcaa agcaacagaa ccagcggaag cagtgctgct caccatgagt 180 tttcctgcac cacatggccc tgaggattcg gctccccagt atagtcatct cttctttaat 240 gtgacaaccc atcacactcc atcgtatgat cacgccccaa atccggacaa gcaatggatc 300 ctgagggtca cggaacccat gcagcctgtt cacaaaaggt tcaccaatct gctcatgacg 360 aagcgactgc aaacgctcca aagtgtcgac gttgccgtgg agcgggttta taacgagcta 420 aaagaactcg gagagctgga caacacttat atagtataca cttccgatca tggttatcat 480 ctgggtcagt ttggacttat taaaggaaaa agttttccct ttgagtttga tgatcgtgtg 540 6 482 DNA Mus sp. 6 aattcggacc ttgggaagtg aggggacacc taaagaaaag gaaacctgag gagtgtggct 60 gtggtgacca gagctattac aacaaagaga aaggtgtcaa acgacaggag aagctaaaga 120 gtcaccttca ccccttcaag gaggctgctg cccaggaggt ggatagcaaa cttcagctct 180 tcaaggagca tcggaggagg aagaaggaga ggaaggagaa gaaacggcag aggaagggag 240 aggagtgtag cctgcctggc cttacctgct tcacccatga caacaaccac tggcagactg 300 ccccattctg gaacttggga tctttctgtg cctgcacaag ttctaacaac aatacctact 360 gggtgttgcg tacagtcaac gagacgcaca atttcctgtt ttgtgagttt gctactggct 420 ttctggaata tttcgacatg aatacggatc cttatcagct cacaaataca gtacacacag 480 ta 482 7 160 PRT Mus sp. 7 Phe Gly Pro Trp Glu Val Arg Gly His Leu Lys Lys Arg Lys Pro Glu 1 5 10 15 Glu Cys Gly Cys Gly Asp Gln Ser Tyr Tyr Asn Lys Glu Lys Gly Val 20 25 30 Lys Arg Gln Glu Lys Leu Lys Ser His Leu His Pro Phe Lys Glu Ala 35 40 45 Ala Ala Gln Glu Val Asp Ser Lys Leu Gln Leu Phe Lys Glu His Arg 50 55 60 Arg Arg Lys Lys Glu Arg Lys Glu Lys Lys Arg Gln Arg Lys Gly Glu 65 70 75 80 Glu Cys Ser Leu Pro Gly Leu Thr Cys Phe Thr His Asp Asn Asn His 85 90 95 Trp Gln Thr Ala Pro Phe Trp Asn Leu Gly Ser Phe Cys Ala Cys Thr 100 105 110 Ser Ser Asn Asn Asn Thr Tyr Trp Val Leu Arg Thr Val Asn Glu Thr 115 120 125 His Asn Phe Leu Phe Cys Glu Phe Ala Thr Gly Phe Leu Glu Tyr Phe 130 135 140 Asp Met Asn Thr Asp Pro Tyr Gln Leu Thr Asn Thr Val His Thr Val 145 150 155 160 8 538 DNA Mus sp. 8 gtagcaccga tgggtcactt tgatgggatt gggggcagaa taatctggaa ggccaccagt 60 accactgaaa ctgccaccat ccttgtcatc ttggtcttca ggggcccctg agcagtgcgg 120 cttgctaagg ttgcggggct gaggcacagt atccaagcct acgtggtata tctcaccgtc 180 cacctcgatg gccacggaac ggatggagcg gttccgggca tagctggtct tatacttttt 240 cttaaagagc ttacggcgtc cagccaggcc cagtttgtag tcccctccac cgccactgtc 300 acagctgcag gcctcgctgc tctggccgtc atacttgggc accaggttgg agagggctct 360 gctgccaccg ccgccaccaa accgcatggg gcctttacat ttgtgcagct tcagcgtccc 420 agaagcgtcc tccacacact gccacttctg ccccagctgt tcgcatgctg tctggtactc 480 agctcgctga cacaggtcct tcacgcgctg gtacttgggc aggaagttct cctcctgg 538 9 466 DNA Mus sp. 9 cgacttggac ctgtacaagt ccctgcaggc ttggaaagac cacaagctgc acatcgacca 60 tgagatcgaa accctgcaga acaaaattaa gaaccttcga gaagtcaggg gtcacctgaa 120 gaagaagcga ccggaagaat gtgactgcca taaaatcagt taccacagcc aacacaaagg 180 ccgtctcaag cacaaaggct ccagcctgca ccctttcagg aagggtctgc aggagaagga 240 caaggtgtgg ctgctgcggg acagaaacgc aagaagaaac tgcgcaactg ctcaaacggc 300 tgcagaacaa cgatacgtgc agcatgcccg gcctcacgtg ctttacccac gacaaccacc 360 actggcagac ggcgccactc tggacgctgg ggccgttctg cgcctgcacc agcgccaaca 420 acaacacgta ctggtgcttg aggaccataa atgagaccca caactt 466 10 494 DNA Mus sp. 10 agaagaagcg accggaagaa tgtgactgcc ataaaatcag ttaccacagc caacacaaag 60 gccgtctcaa gcacaaaggc tccagcctgc accctttcag gaagggtctg caggagaagg 120 acaaggtgtg gctgctgcgg gacagaaacg caagaagaaa ctgcgcaact gctcaaacgg 180 ctgcagaaca acgatacgtg cagcatgccg gcctcacgtg ctttacccac gacaaccacc 240 actggcagac ggcgccactc tggacgctgg ggccgttctg cgcctgcacc agcgccaaca 300 acaacacgta ctggtgcttg aggaccataa atgagaccca caacttcctc ttctgcgaat 360 ttgcaaccgg cttcatagaa tactttgacc tcagtacaga cccctaccag ctgatgaacg 420 cggtgaacac actggacagg gacgtcctta accaactgca cgtgcagctc atggagctaa 480 ggagctgtaa aggg 494 11 436 DNA Mus sp. 11 agcagagccc tctccaacct ggtgcccaag tatgacggcc agagcagcga ggcctgcagc 60 tgtgacagtg gcggtggagg ggactacaaa ctgggcctgg ctggacgccg taagctcttt 120 aagaaaaagt ataagaccag ctatgcccgg aaccgctcca tccgttccgt ggccatcgag 180 gtggacggtg agatatacca cgtaggcttg gatactgtgc ctcagccccg caaccttagc 240 aagccgcact ggccaggggc ccgtgaagac caagatgaca aggatggtgg cagtttcagt 300 ggtactggtg gccttccaga ttattctgcc cccaatccca tcaaagtgac ccatcggtgc 360 tacatccttg agaatgacac agtccagtgc gacttggacc tgtacaagtc cctgcaggct 420 tggaaagacc acaagc 436 12 459 DNA Mus sp. 12 cccacgacaa ccaccactgg cagacggcgc cactctggac gctggggccg ttctgcgcct 60 gcaccagcgc caacaacaac acgtactggt gcttgaggac cataaatgag acccacaact 120 tcctcttctg cgaatttgca accggcttca tagaatactt tgacctcagt acagacccct 180 accagctgat gaacgcggtg aacacactgg acagggacgt ccttaaccaa ctgcacgtgc 240 agctcatgga gctaaggagc tgtaaaggct acaagcagtg caacccccgg acccgcaaca 300 tggacctggg gcttagagac ggaggaagct atgaacaata caggcagttt cagcgtcgaa 360 aatggccaga aatgaagaga ccttcttcca aatcactggg acagctatgg gaaggttggg 420 aaggctaagc ggccatagag agaggaactc caaaaccag 459 13 1367 DNA Mus sp. 13 ccaggaggag aacttcctgc ccaagtacca gcgcgtgaag gacctgtgtc agcgagctga 60 gtaccagaca gcatgcgaac agctggggca gaagtggcag tgtgtggagg acgcttctgg 120 gacgctgaag ctgcacaaat gtaaaggccc catgcggttt ggtggcggcg gtggcagcag 180 agccctctcc aacctggtgc ccaagtatga cggccagagc agcgaggcct gcagctgtga 240 cagtggcggt ggaggggact acaaactggg cctggctgga cgccgtaagc tctttaagaa 300 aaagtataag accagctatg cccggaaccg ctccatccgt tccgtggcca tcgaggtgga 360 cggtgagata taccacgtag gcttggatac tgtgcctcag ccccgcaacc ttagcaagcc 420 gcactgsyca ggggcccstg aagaccaaga tgacaaggat ggtggcagtt tcagtggtac 480 tggtggcctt ccagattatt ctgcccccaa tcccatcaaa gtgacccatc ggtgctacat 540 ccttgagaat gacacagtcc agtgcgactt ggacctgtac aagtccctgc aggcttggaa 600 agaccacaag ctgcacatcg accatgagat cgaaaccctg cagaacaaaa ttaagaacct 660 tcgagaagtc aggggtcacc tgaagaagaa gcgaccggaa gaatgtgact gccataaaat 720 cagttaccac agccaacaca aaggccgtct caagcacaaa ggctccagcc tgcacccttt 780 caggaagggt ctgcaggaga aggacaaggt gtggctgctg cgggacagaa acgcaagaag 840 aaactgcgca actgctcaaa cggctgcaga acaacgatac gtgcagcatg ccggcctcac 900 gtgctttacc cacgacaacc accactggca gacggcgcca ctctggacgc tggggccgtt 960 ctgcgcctgc accagcgcca acaacaacac gtactggtgc ttgaggacca taaatgagac 1020 ccacaacttc ctcttctgcg aatttgcaac cggcttcata gaatactttg acctcagtac 1080 agacccctac cagctgatga acgcggtgaa cacactggac agggacgtcc ttaaccaact 1140 gcacgtgcag ctcatggagc taaggagctg taaaggctac aagcagtgca acccccggac 1200 ccgcaacatg gacctggggc ttagagacgg aggaagctat gaacaataca ggcagtttca 1260 gcgtcgaaaa tggccagaaa tgaagagacc ttcttccaaa tcactgggac agctatggga 1320 aggttgggaa ggctaagcgg ccatagagag aggaactcca aaaccag 1367 14 455 PRT Mus sp. UNSURE (142-143) any amino acid 14 Gln Glu Glu Asn Phe Leu Pro Lys Tyr Gln Arg Val Lys Asp Leu Cys 1 5 10 15 Gln Arg Ala Glu Tyr Gln Thr Ala Cys Glu Gln Leu Gly Gln Lys Trp 20 25 30 Gln Cys Val Glu Asp Ala Ser Gly Thr Leu Lys Leu His Lys Cys Lys 35 40 45 Gly Pro Met Arg Phe Gly Gly Gly Gly Gly Ser Arg Ala Leu Ser Asn 50 55 60 Leu Val Pro Lys Tyr Asp Gly Gln Ser Ser Glu Ala Cys Ser Cys Asp 65 70 75 80 Ser Gly Gly Gly Gly Asp Tyr Lys Leu Gly Leu Ala Gly Arg Arg Lys 85 90 95 Leu Phe Lys Lys Lys Tyr Lys Thr Ser Tyr Ala Arg Asn Arg Ser Ile 100 105 110 Arg Ser Val Ala Ile Glu Val Asp Gly Glu Ile Tyr His Val Gly Leu 115 120 125 Asp Thr Val Pro Gln Pro Arg Asn Leu Ser Lys Pro His Xaa Xaa Gly 130 135 140 Ala Xaa Glu Asp Gln Asp Asp Lys Asp Gly Gly Ser Phe Ser Gly Thr 145 150 155 160 Gly Gly Leu Pro Asp Tyr Ser Ala Pro Asn Pro Ile Lys Val Thr His 165 170 175 Arg Cys Tyr Ile Leu Glu Asn Asp Thr Val Gln Cys Asp Leu Asp Leu 180 185 190 Tyr Lys Ser Leu Gln Ala Trp Lys Asp His Lys Leu His Ile Asp His 195 200 205 Glu Ile Glu Thr Leu Gln Asn Lys Ile Lys Asn Leu Arg Glu Val Arg 210 215 220 Gly His Leu Lys Lys Lys Arg Pro Glu Glu Cys Asp Cys His Lys Ile 225 230 235 240 Ser Tyr His Ser Gln His Lys Gly Arg Leu Lys His Lys Gly Ser Ser 245 250 255 Leu His Pro Phe Arg Lys Gly Leu Gln Glu Lys Asp Lys Val Trp Leu 260 265 270 Leu Arg Asp Arg Asn Ala Arg Arg Asn Cys Ala Thr Ala Gln Thr Ala 275 280 285 Ala Glu Gln Arg Tyr Val Gln His Ala Gly Leu Thr Cys Phe Thr His 290 295 300 Asp Asn His His Trp Gln Thr Ala Pro Leu Trp Thr Leu Gly Pro Phe 305 310 315 320 Cys Ala Cys Thr Ser Ala Asn Asn Asn Thr Tyr Trp Cys Leu Arg Thr 325 330 335 Ile Asn Glu Thr His Asn Phe Leu Phe Cys Glu Phe Ala Thr Gly Phe 340 345 350 Ile Glu Tyr Phe Asp Leu Ser Thr Asp Pro Tyr Gln Leu Met Asn Ala 355 360 365 Val Asn Thr Leu Asp Arg Asp Val Leu Asn Gln Leu His Val Gln Leu 370 375 380 Met Glu Leu Arg Ser Cys Lys Gly Tyr Lys Gln Cys Asn Pro Arg Thr 385 390 395 400 Arg Asn Met Asp Leu Gly Leu Arg Asp Gly Gly Ser Tyr Glu Gln Tyr 405 410 415 Arg Gln Phe Gln Arg Arg Lys Trp Pro Glu Met Lys Arg Pro Ser Ser 420 425 430 Lys Ser Leu Gly Gln Leu Trp Glu Gly Trp Glu Gly Xaa Ala Ala Ile 435 440 445 Glu Arg Gly Thr Pro Lys Pro 450 455 15 4834 DNA Homo sapiens 15 gatgtggagc tggggtccct gcaagtcatg aacaaaacga gaaagattat ggaacatggg 60 ggggccacct tcatcaatgc ctttgtgact acacccatgt gctgcccgtc acggtcctcc 120 atgctcaccg ggaagtatgt gcacaatcac aatgtctaca ccaacaacga gaactgctct 180 tccccctcgt ggcaggccat gcatgagcct cggacttttg ctgtatatct taacaacact 240 ggctacagaa cagccttttt tggaaaatac ctcaatgaat ataatggcag ctacatcccc 300 cctgggtggc gagaatggct tggattaatc aagaattctc gcttctataa ttacactgtt 360 tgtcgcaatg gcatcaaaga aaagcatgga tttgattatg caaaggacta cttcacagac 420 ttaatcacta acgagagcat taattacttc aaaatgtcta agagaatgta tccccatagg 480 cccgttatga tggtgatcag ccacgctgcg ccccacggcc ccgaggactc agccccacag 540 ttttctaaac tgtaccccaa tgcttcccaa cacataactc ctagttataa ctatgcacca 600 aatatggata aacactggat tatgcagtac acaggaccaa tgctgcccat ccacatggaa 660 tttacaaaca ttctacagcg caaaaggctc cagactttga tgtcagtgga tgattctgtg 720 gagaggctgt ataacatgct cgtggagacg ggggagctgg agaatactta catcatttac 780 accgccgacc atggttacca tattgggcag tttggactgg tcaaggggaa atccatgcca 840 tatgactttg atattcgtgt gccttttttt attcgtggtc caagtgtaga accaggatca 900 atagtcccac agatcgttct caacattgac ttggccccca cgatcctgga tattgctggg 960 ctcgacacac ctcctgatgt ggacggcaag tctgtcctca aacttctgga cccagaaaag 1020 ccaggtaaca ggtttcgaac aaacaagaag gccaaaattt ggcgtgatac attcctagtg 1080 gaaagaggca aatttctacg taagaaggaa gaatccagca agaatatcca acagtcaaat 1140 cacttgccca aatatgaacg ggtcaaagaa ctatgccagc aggccaggta ccagacagcc 1200 tgtgaacaac cggggcagaa gtggcaatgc attgaggata catctggcaa gcttcgaatt 1260 cacaagtgta aaggacccag tgacctgctc acagtccggc agagcacgcg gaacctctac 1320 gctcgcggct tccatgacaa agacaaagag tgcagttgta gggagtctgg ttaccgtgcc 1380 agcagaagcc aaagaaagag tcaacggcaa ttcttgagaa accaggggac tccaaagtac 1440 aagcccagat ttgtccatac tcggcagaca cgttccttgt ccgtcgaatt tgaaggtgaa 1500 atatatgaca taaatctgga agaagaagaa gaattgcaag tgttgcaacc aagaaacatt 1560 gctaagcgtc atgatgaagg ccacaagggg ccaagagatc tccaggcttc cagtggtggc 1620 aacaggggca ggatgctggc agatagcagc aacgccgtgg gcccacctac cactgtccga 1680 gtgacacaca agtgttttat tcttcccaat gactctatcc attgtgagag agaactgtac 1740 caatcggcca gagcgtggaa ggaccataag gcatacattg acaaagagat tgaagctctg 1800 caagataaaa ttaagaattt aagagaagtg agaggacatc tgaagagaag gaagcctgag 1860 gaatgtagct gcagtaaaca aagctattac aataaagaga aaggtgtaaa aaagcaagag 1920 aaattaaaga gccatcttca cccattcaag gaggctgctc aggaagtaga tagcaaactg 1980 caacttttca aggagaacaa ccgtaggagg aagaaggaga ggaaggagaa gagacggcag 2040 aggaaggggg aagagtgcag cctgcctggc ctcacttgct tcacgcatga caacaaccac 2100 tggcagacag ccccgttctg gaacctggga tctttctgtg cttgcacgag ttctaacaat 2160 aacacctact ggtgtttgcg tacagttaat gagacgcata attttctttt ctgtgagttt 2220 gctactggct ttttggagta ttttgatatg aatacagatc cttatcagct cacaaataca 2280 gtgcacacgg tagaacgagg cattttgaat cagctacacg tacaactaat ggagctcaga 2340 agctgtcaag gatataagca gtgcaaccca agacctaaga atcttgatgt tggaaataaa 2400 gatggaggaa gctatgacct acacagagga cagttatggg atggatggga aggttaatca 2460 gccccgtctc actgcagaca tcaactggca aggcctagag gagctacaca gtgtgaatga 2520 aaacatctat gagtacagac aaaactacag acttagtctg gtggactgga ctaattactt 2580 gaaggattta gatagagtat ttgcactgct gaagagtcac tatgagcaaa ataaaacaaa 2640 taagactcaa actgctcaaa gtgacgggtt cttggttgtc tctgctgagc acgctgtgtc 2700 aatggagatg gcctctgctg actcagatga agacccaagg cataaggttg ggaaaacacc 2760 tcatttgacc ttgccagctg accttcaaac cctgcatttg aaccgaccaa cattaagtcc 2820 agagagtaaa cttgaatgga ataacgacat tccagaagtt aatcatttga attctgaaca 2880 ctggagaaaa accgaaaaat ggacggggca tgaagagact aatcatctgg aaaccgattt 2940 cagtggcgat ggcatgacag agctagagct cgggcccagc cccaggctgc agcccattcg 3000 caggcacccg aaagaacttc cccagtatgg tggtcctgga aaggacattt ttgaagatca 3060 actatatctt cctgtgcatt ccgatggaat ttcagttcat cagatgttca ccatggccac 3120 cgcagaacac cgaagtaatt ccagcatagc ggggaagatg ttgaccaagg tggagaagaa 3180 tcacgaaaag gagaagtcac agcacctaga aggcagcgcc tcctcttcac tctcctctga 3240 ttagatgaaa ctgttacctt accctaaaca cagtatttct ttttaacttt tttatttgta 3300 aactaataaa ggtaatcaca gccaccaaca ttccaagcta ccctgggtac ctttgtgcag 3360 tagaagctag tgagcatgtg agcaagcggt gtgcacacgg agactcatcg ttataattta 3420 ctatctgcca agagtagaaa gaaaggctgg ggatatttgg gttggcttgg ttttgatttt 3480 ttgcttgttt gtttgttttg tactaaaaca gtattatctt ttgaatatcg tagggacata 3540 agtatataca tgttatccaa tcaagatggc tagaatggtg cctttctgag tgtctaaaac 3600 ttgacacccc tggtaaatct ttcaacacac ttccactgcc tgcgtaatga agttttgatt 3660 catttttaac cactggaatt tttcaatgcc gtcattttca gttagatgat tttgcacttt 3720 gagattaaaa tgccatgtct atttgattag tcttattttt ttatttttac aggcttatca 3780 gtctcactgt tggctgtcat tgtgacaaag tcaaataaac ccccaaggac gacacacagt 3840 atggatcaca tattgtttga cattaagctt ttgccagaaa atgttgcatg tgttttacct 3900 cgacttgcta aaatcgatta gcagaaaggc atggctaata atgttggtgg tgaaaataaa 3960 taaataagta aacaaaatga agattgcctg ctctctctgt gcctagcctc aaagcgttca 4020 tcatacatca tacctttaag attgctatat tttgggttat tttcttgaca ggagaaaaag 4080 atctaaagat cttttatttt catctttttt ggttttcttg gcatgactaa gaagcttaaa 4140 tgttgataaa atatgactag ttttgaattt acaccaagaa cttctcaata aaagaaaatc 4200 atgaatgctc cacaatttca acataccaca agagaagtta atttcttaac attgtgttct 4260 atgattattt gtaagacctt caccaagttc tgatatcttt taaagacata gttcaaaatt 4320 gcttttgaaa atctgtattc ttgaaaatat ccttgttgtg tattaggttt ttaaatacca 4380 gctaaaggat tacctcactg agtcatcagt accctcctat tcagctcccc aagatgatgt 4440 gtttttgctt accctaagag aggttttctt cttattttta gataattcaa gtgcttagat 4500 aaattatgtt ttctttaagt gtttatggta aactctttta aagaaaattt aatatgttat 4560 agctgaatct ttttggtaac tttaaatctt tatcatagac tctgtacata tgttcaaatt 4620 agctgcttgc ctgatgtgtg tatcatcggt gggatgacag aacaaacata tttatgatca 4680 tgaataatgt gctttgtaaa aagatttcaa gttattagga agcatactct gttttttaat 4740 catgtataat attccatgat acttttatag aacaattctg gcttcaggaa agtctagaag 4800 caatatttct tcaaataaaa ggtgtttaaa cttt 4834 16 1611 PRT Homo sapiens UNSURE (819) any amino acid 16 Asp Val Glu Leu Gly Ser Leu Gln Val Met Asn Lys Thr Arg Lys Ile 1 5 10 15 Met Glu His Gly Gly Ala Thr Phe Ile Asn Ala Phe Val Thr Thr Pro 20 25 30 Met Cys Cys Pro Ser Arg Ser Ser Met Leu Thr Gly Lys Tyr Val His 35 40 45 Asn His Asn Val Tyr Thr Asn Asn Glu Asn Cys Ser Ser Pro Ser Trp 50 55 60 Gln Ala Met His Glu Pro Arg Thr Phe Ala Val Tyr Leu Asn Asn Thr 65 70 75 80 Gly Tyr Arg Thr Ala Phe Phe Gly Lys Tyr Leu Asn Glu Tyr Asn Gly 85 90 95 Ser Tyr Ile Pro Pro Gly Trp Arg Glu Trp Leu Gly Leu Ile Lys Asn 100 105 110 Ser Arg Phe Tyr Asn Tyr Thr Val Cys Arg Asn Gly Ile Lys Glu Lys 115 120 125 His Gly Phe Asp Tyr Ala Lys Asp Tyr Phe Thr Asp Leu Ile Thr Asn 130 135 140 Glu Ser Ile Asn Tyr Phe Lys Met Ser Lys Arg Met Tyr Pro His Arg 145 150 155 160 Pro Val Met Met Val Ile Ser His Ala Ala Pro His Gly Pro Glu Asp 165 170 175 Ser Ala Pro Gln Phe Ser Lys Leu Tyr Pro Asn Ala Ser Gln His Ile 180 185 190 Thr Pro Ser Tyr Asn Tyr Ala Pro Asn Met Asp Lys His Trp Ile Met 195 200 205 Gln Tyr Thr Gly Pro Met Leu Pro Ile His Met Glu Phe Thr Asn Ile 210 215 220 Leu Gln Arg Lys Arg Leu Gln Thr Leu Met Ser Val Asp Asp Ser Val 225 230 235 240 Glu Arg Leu Tyr Asn Met Leu Val Glu Thr Gly Glu Leu Glu Asn Thr 245 250 255 Tyr Ile Ile Tyr Thr Ala Asp His Gly Tyr His Ile Gly Gln Phe Gly 260 265 270 Leu Val Lys Gly Lys Ser Met Pro Tyr Asp Phe Asp Ile Arg Val Pro 275 280 285 Phe Phe Ile Arg Gly Pro Ser Val Glu Pro Gly Ser Ile Val Pro Gln 290 295 300 Ile Val Leu Asn Ile Asp Leu Ala Pro Thr Ile Leu Asp Ile Ala Gly 305 310 315 320 Leu Asp Thr Pro Pro Asp Val Asp Gly Lys Ser Val Leu Lys Leu Leu 325 330 335 Asp Pro Glu Lys Pro Gly Asn Arg Phe Arg Thr Asn Lys Lys Ala Lys 340 345 350 Ile Trp Arg Asp Thr Phe Leu Val Glu Arg Gly Lys Phe Leu Arg Lys 355 360 365 Lys Glu Glu Ser Ser Lys Asn Ile Gln Gln Ser Asn His Leu Pro Lys 370 375 380 Tyr Glu Arg Val Lys Glu Leu Cys Gln Gln Ala Arg Tyr Gln Thr Ala 385 390 395 400 Cys Glu Gln Pro Gly Gln Lys Trp Gln Cys Ile Glu Asp Thr Ser Gly 405 410 415 Lys Leu Arg Ile His Lys Cys Lys Gly Pro Ser Asp Leu Leu Thr Val 420 425 430 Arg Gln Ser Thr Arg Asn Leu Tyr Ala Arg Gly Phe His Asp Lys Asp 435 440 445 Lys Glu Cys Ser Cys Arg Glu Ser Gly Tyr Arg Ala Ser Arg Ser Gln 450 455 460 Arg Lys Ser Gln Arg Gln Phe Leu Arg Asn Gln Gly Thr Pro Lys Tyr 465 470 475 480 Lys Pro Arg Phe Val His Thr Arg Gln Thr Arg Ser Leu Ser Val Glu 485 490 495 Phe Glu Gly Glu Ile Tyr Asp Ile Asn Leu Glu Glu Glu Glu Glu Leu 500 505 510 Gln Val Leu Gln Pro Arg Asn Ile Ala Lys Arg His Asp Glu Gly His 515 520 525 Lys Gly Pro Arg Asp Leu Gln Ala Ser Ser Gly Gly Asn Arg Gly Arg 530 535 540 Met Leu Ala Asp Ser Ser Asn Ala Val Gly Pro Pro Thr Thr Val Arg 545 550 555 560 Val Thr His Lys Cys Phe Ile Leu Pro Asn Asp Ser Ile His Cys Glu 565 570 575 Arg Glu Leu Tyr Gln Ser Ala Arg Ala Trp Lys Asp His Lys Ala Tyr 580 585 590 Ile Asp Lys Glu Ile Glu Ala Leu Gln Asp Lys Ile Lys Asn Leu Arg 595 600 605 Glu Val Arg Gly His Leu Lys Arg Arg Lys Pro Glu Glu Cys Ser Cys 610 615 620 Ser Lys Gln Ser Tyr Tyr Asn Lys Glu Lys Gly Val Lys Lys Gln Glu 625 630 635 640 Lys Leu Lys Ser His Leu His Pro Phe Lys Glu Ala Ala Gln Glu Val 645 650 655 Asp Ser Lys Leu Gln Leu Phe Lys Glu Asn Asn Arg Arg Arg Lys Lys 660 665 670 Glu Arg Lys Glu Lys Arg Arg Gln Arg Lys Gly Glu Glu Cys Ser Leu 675 680 685 Pro Gly Leu Thr Cys Phe Thr His Asp Asn Asn His Trp Gln Thr Ala 690 695 700 Pro Phe Trp Asn Leu Gly Ser Phe Cys Ala Cys Thr Ser Ser Asn Asn 705 710 715 720 Asn Thr Tyr Trp Cys Leu Arg Thr Val Asn Glu Thr His Asn Phe Leu 725 730 735 Phe Cys Glu Phe Ala Thr Gly Phe Leu Glu Tyr Phe Asp Met Asn Thr 740 745 750 Asp Pro Tyr Gln Leu Thr Asn Thr Val His Thr Val Glu Arg Gly Ile 755 760 765 Leu Asn Gln Leu His Val Gln Leu Met Glu Leu Arg Ser Cys Gln Gly 770 775 780 Tyr Lys Gln Cys Asn Pro Arg Pro Lys Asn Leu Asp Val Gly Asn Lys 785 790 795 800 Asp Gly Gly Ser Tyr Asp Leu His Arg Gly Gln Leu Trp Asp Gly Trp 805 810 815 Glu Gly Xaa Ser Ala Pro Ser His Cys Arg His Gln Leu Ala Arg Pro 820 825 830 Arg Gly Ala Thr Gln Cys Glu Xaa Lys His Leu Xaa Val Gln Thr Lys 835 840 845 Leu Gln Thr Xaa Ser Gly Gly Leu Asp Xaa Leu Leu Glu Gly Phe Arg 850 855 860 Xaa Ser Ile Cys Thr Ala Glu Glu Ser Leu Xaa Ala Lys Xaa Asn Lys 865 870 875 880 Xaa Asp Ser Asn Cys Ser Lys Xaa Arg Val Leu Gly Cys Leu Cys Xaa 885 890 895 Ala Arg Cys Val Asn Gly Asp Gly Leu Cys Xaa Leu Arg Xaa Arg Pro 900 905 910 Lys Ala Xaa Gly Trp Glu Asn Thr Ser Phe Asp Leu Ala Ser Xaa Pro 915 920 925 Ser Asn Pro Ala Phe Glu Pro Thr Asn Ile Lys Ser Arg Glu Xaa Thr 930 935 940 Xaa Met Glu Xaa Arg His Ser Arg Ser Xaa Ser Phe Glu Phe Xaa Thr 945 950 955 960 Leu Glu Lys Asn Arg Lys Met Asp Gly Ala Xaa Arg Asp Xaa Ser Ser 965 970 975 Gly Asn Arg Phe Gln Trp Arg Trp His Asp Arg Ala Arg Ala Arg Ala 980 985 990 Gln Pro Gln Ala Ala Ala His Ser Gln Ala Pro Glu Arg Thr Ser Pro 995 1000 1005 Val Trp Trp Ser Trp Lys Gly His Phe Xaa Arg Ser Thr Ile Ser Ser 1010 1015 1020 Cys Ala Phe Arg Trp Asn Phe Ser Ser Ser Asp Val His His Gly His 1025 1030 1035 1040 Arg Arg Thr Pro Lys Xaa Phe Gln His Ser Gly Glu Asp Val Asp Gln 1045 1050 1055 Gly Gly Glu Glu Ser Arg Lys Gly Glu Val Thr Ala Pro Arg Arg Gln 1060 1065 1070 Arg Leu Leu Phe Thr Leu Leu Xaa Leu Asp Glu Thr Val Thr Leu Pro 1075 1080 1085 Xaa Thr Gln Tyr Phe Phe Leu Thr Phe Leu Phe Val Asn Xaa Xaa Arg 1090 1095 1100 Xaa Ser Gln Pro Pro Thr Phe Gln Ala Thr Leu Gly Thr Phe Val Gln 1105 1110 1115 1120 Xaa Lys Leu Val Ser Met Xaa Ala Ser Gly Val His Thr Glu Thr His 1125 1130 1135 Arg Tyr Asn Leu Leu Ser Ala Lys Ser Arg Lys Lys Gly Trp Gly Tyr 1140 1145 1150 Leu Gly Trp Leu Gly Phe Asp Phe Leu Leu Val Cys Leu Phe Cys Thr 1155 1160 1165 Lys Thr Val Leu Ser Phe Glu Tyr Arg Arg Asp Ile Ser Ile Tyr Met 1170 1175 1180 Leu Ser Asn Gln Asp Gly Xaa Asn Gly Ala Phe Leu Ser Val Xaa Asn 1185 1190 1195 1200 Leu Thr Pro Leu Val Asn Leu Ser Thr His Phe His Cys Leu Arg Asn 1205 1210 1215 Glu Val Leu Ile His Phe Xaa Pro Leu Glu Phe Phe Asn Ala Val Ile 1220 1225 1230 Phe Ser Xaa Met Ile Leu His Phe Glu Ile Lys Met Pro Cys Leu Phe 1235 1240 1245 Asp Xaa Ser Tyr Phe Phe Ile Phe Thr Gly Leu Ser Val Ser Leu Leu 1250 1255 1260 Ala Val Ile Val Thr Lys Ser Asn Lys Pro Pro Arg Thr Thr His Ser 1265 1270 1275 1280 Met Asp His Ile Leu Phe Asp Ile Lys Leu Leu Pro Glu Asn Val Ala 1285 1290 1295 Cys Val Leu Pro Arg Leu Ala Lys Ile Asp Xaa Gln Lys Gly Met Ala 1300 1305 1310 Asn Asn Val Gly Gly Glu Asn Lys Xaa Ile Ser Lys Gln Asn Glu Asp 1315 1320 1325 Cys Leu Leu Ser Leu Cys Leu Ala Ser Lys Arg Ser Ser Tyr Ile Ile 1330 1335 1340 Pro Leu Arg Leu Leu Tyr Phe Gly Leu Phe Ser Xaa Gln Glu Lys Lys 1345 1350 1355 1360 Ile Xaa Arg Ser Phe Ile Phe Ile Phe Phe Gly Phe Leu Gly Met Thr 1365 1370 1375 Lys Lys Leu Lys Cys Xaa Xaa Asn Met Thr Ser Phe Glu Phe Thr Pro 1380 1385 1390 Arg Thr Ser Gln Xaa Lys Lys Ile Met Asn Ala Pro Gln Phe Gln His 1395 1400 1405 Thr Thr Arg Glu Val Asn Phe Leu Thr Leu Cys Ser Met Ile Ile Cys 1410 1415 1420 Lys Thr Phe Thr Lys Phe Xaa Tyr Leu Leu Lys Thr Xaa Phe Lys Ile 1425 1430 1435 1440 Ala Phe Glu Asn Leu Tyr Ser Xaa Lys Tyr Pro Cys Cys Val Leu Gly 1445 1450 1455 Phe Xaa Ile Pro Ala Lys Gly Leu Pro His Xaa Val Ile Ser Thr Leu 1460 1465 1470 Leu Phe Ser Ser Pro Arg Xaa Cys Val Phe Ala Tyr Pro Lys Arg Gly 1475 1480 1485 Phe Leu Leu Ile Phe Arg Xaa Phe Lys Cys Leu Asp Lys Leu Cys Phe 1490 1495 1500 Leu Xaa Val Phe Met Val Asn Ser Phe Lys Glu Asn Leu Ile Cys Tyr 1505 1510 1515 1520 Ser Xaa Ile Phe Leu Val Thr Leu Asn Leu Tyr His Arg Leu Cys Thr 1525 1530 1535 Tyr Val Gln Ile Ser Cys Leu Pro Asp Val Cys Ile Ile Gly Gly Met 1540 1545 1550 Thr Glu Gln Thr Tyr Leu Xaa Ser Xaa Ile Met Cys Phe Val Lys Arg 1555 1560 1565 Phe Gln Val Ile Arg Lys His Thr Leu Phe Phe Asn His Val Xaa Tyr 1570 1575 1580 Ser Met Ile Leu Leu Xaa Asn Asn Ser Gly Phe Arg Lys Val Xaa Lys 1585 1590 1595 1600 Gln Tyr Phe Phe Lys Xaa Lys Val Phe Lys Leu 1605 1610 17 590 DNA Homo sapiens unsure (173) a, c, g or t 17 cacctttctc tttattggaa tagctttgtt tactgcagct acattcctca ggcttccttc 60 tcttcagatg tcctctcact tctcttaaat tcttaatttt atcttgcaga gcttcaatct 120 ctttgtcaat gtatgcctta tggtccttcc acgctctggc cgattggtac agntctctct 180 cacaatggat agagtcattg ggaagaataa aacacttgtg tgtcactcgg acagtggtag 240 gtgggcccac ggcgttgctg ctatctgcca gcatcctgcc cctgttgcca ccactggaag 300 cctggagatc tcttggcccc ttgtggcctt catcatgacg cttagcaatg tttcttggtt 360 gcaacacttg caattcttct tcttcttcca gatttatgtc atatatttca ccttcaaatt 420 cgacggacaa ggaacgtgtc tgccgagtat ggacaaatct gggcttgtac tttggagtcc 480 cctggtttct caagaattgc cgttgactct ttctttggct tctgctggca cggtaaccag 540 actccctaca actgcactct ntgtctntgt catggaagcc gcgagcgtag 7590 18 196 PRT Homo sapiens UNSURE (8) any amino acid 18 Tyr Ala Arg Gly Phe His Asp Xaa Asp Xaa Glu Cys Ser Cys Arg Glu 1 5 10 15 Ser Gly Tyr Arg Ala Ser Arg Ser Gln Arg Lys Ser Gln Arg Gln Phe 20 25 30 Leu Arg Asn Gln Gly Thr Pro Lys Tyr Lys Pro Arg Phe Val His Thr 35 40 45 Arg Gln Thr Arg Ser Leu Ser Val Glu Phe Glu Gly Glu Ile Tyr Asp 50 55 60 Ile Asn Leu Glu Glu Glu Glu Glu Leu Gln Val Leu Gln Pro Arg Asn 65 70 75 80 Ile Ala Lys Arg His Asp Glu Gly His Lys Gly Pro Arg Asp Leu Gln 85 90 95 Ala Ser Ser Gly Gly Asn Arg Gly Arg Met Leu Ala Asp Ser Ser Asn 100 105 110 Ala Val Gly Pro Pro Thr Thr Val Arg Val Thr His Lys Cys Phe Ile 115 120 125 Leu Pro Asn Asp Ser Ile His Cys Glu Arg Xaa Leu Tyr Gln Ser Ala 130 135 140 Arg Ala Trp Lys Asp His Lys Ala Tyr Ile Asp Lys Glu Ile Glu Ala 145 150 155 160 Leu Gln Asp Lys Ile Lys Asn Leu Arg Glu Val Arg Gly His Leu Lys 165 170 175 Arg Arg Lys Pro Glu Glu Cys Ser Cys Ser Lys Gln Ser Tyr Ser Asn 180 185 190 Lys Glu Lys Gly 195 19 288 DNA Homo sapiens unsure (35) a, c, g or t 19 aagaaggaga ggaaggagaa gagacggcag agganggggg aagagtgcag cctgcctggc 60 ctcacttgct tcacgcatga caacaaccac tggcagacag ccccgttntg gaacctggga 120 tctttctgtg cttgcacgag ttctaacaat aacacctact ggtgtttgcn tacagttaat 180 gagacgcata atttnntttt ctgtgagttt gctactggct ttttggagta ttnngatatg 240 aatacagatc cttatcagct cacaaataca gtgcacacgg ttagaacg 288 20 96 PRT Homo sapiens UNSURE (12) any amino acid 20 Lys Lys Glu Arg Lys Glu Lys Arg Arg Gln Arg Xaa Gly Glu Glu Cys 1 5 10 15 Ser Leu Pro Gly Leu Thr Cys Phe Thr His Asp Asn Asn His Trp Gln 20 25 30 Thr Ala Pro Xaa Trp Asn Leu Gly Ser Phe Cys Ala Cys Thr Ser Ser 35 40 45 Asn Asn Asn Thr Tyr Trp Cys Leu Xaa Thr Val Asn Glu Thr His Asn 50 55 60 Xaa Xaa Phe Cys Glu Phe Ala Thr Gly Phe Leu Glu Tyr Xaa Asp Met 65 70 75 80 Asn Thr Asp Pro Tyr Gln Leu Thr Asn Thr Val His Thr Val Arg Thr 85 90 95 21 296 DNA Homo sapiens unsure (84) a, c, g or t 21 gtggcactgg aggccttccc gactactcag ccgccaaccc cattaaagtg acacatcggt 60 gctacatcct agagaacgac acantccagt gtgacctgga cctgtacaag tccctgcagg 120 cctggaaaga ccacaagctg cacatcgacc acgagattna aaccctgcag aacaaaatta 180 agancctgag ggaagtccga ggtcacctga agaaaaagcg gccagaagaa tgtnactntc 240 acaaaatcag ctaccacacc cagcacaaag gccgcctcaa gcacagaggc tccagt 296 22 98 PRT Homo sapiens UNSURE (28) any amino acid 22 Gly Thr Gly Gly Leu Pro Asp Tyr Ser Ala Ala Asn Pro Ile Lys Val 1 5 10 15 Thr His Arg Cys Tyr Ile Leu Glu Asn Asp Thr Xaa Gln Cys Asp Leu 20 25 30 Asp Leu Tyr Lys Ser Leu Gln Ala Trp Lys Asp His Lys Leu His Ile 35 40 45 Asp His Glu Ile Xaa Thr Leu Gln Asn Lys Ile Lys Xaa Leu Arg Glu 50 55 60 Val Arg Gly His Leu Lys Lys Lys Arg Pro Glu Glu Cys Xaa Xaa His 65 70 75 80 Lys Ile Ser Tyr His Thr Gln His Lys Gly Arg Leu Lys His Arg Gly 85 90 95 Ser Ser 

What is claimed is:
 1. An isolated nucleic acid sequence encoding a human sulfatase-1 protein comprising SEQ ID NO:16. 